Options: -C 0.25 -M 2 === Classifier model (full training set) === J48 pruned tree ------------------ 212148_at <= 5.584893 | 213539_at <= 9.381863 | | 204069_at <= 5.265112 | | | 206033_s_at <= 3.576231 | | | | 203837_at <= 4.577946 | | | | | 205794_s_at <= 5.540017 | | | | | | 206147_x_at <= 7.057561 | | | | | | | 210964_s_at <= 3.937399 | | | | | | | | 213613_s_at <= 4.213057: B-CELL_ALL_HYPO (5.0/1.0) | | | | | | | | 213613_s_at > 4.213057 | | | | | | | | | 209222_s_at <= 5.016167: B-CELL_ALL_HYPO (5.0) | | | | | | | | | 209222_s_at > 5.016167 | | | | | | | | | | 202361_at <= 7.122772: B-CELL_ALL (61.0) | | | | | | | | | | 202361_at > 7.122772: B-CELL_ALL_HYPO (5.0/1.0) | | | | | | | 210964_s_at > 3.937399: B-CELL_ALL_HYPERDIP (4.0) | | | | | | 206147_x_at > 7.057561 | | | | | | | 208626_s_at <= 7.106782 | | | | | | | | 206931_at <= 3.138174: B-CELL_ALL_HYPO (3.0) | | | | | | | | 206931_at > 3.138174: B-CELL_ALL (6.0) | | | | | | | 208626_s_at > 7.106782: B-CELL_ALL_HYPERDIP (47.0/1.0) | | | | | 205794_s_at > 5.540017: B-CELL_ALL_ETV6-RUNX1 (2.0) | | | | 203837_at > 4.577946: B-CELL_ALL_MLL (2.0/1.0) | | | 206033_s_at > 3.576231 | | | | 201334_s_at <= 4.358309: B-CELL_ALL (5.0) | | | | 201334_s_at > 4.358309 | | | | | 210087_s_at <= 4.894515: B-CELL_ALL_ETV6-RUNX1 (51.0) | | | | | 210087_s_at > 4.894515: B-CELL_ALL (2.0/1.0) | | 204069_at > 5.265112: B-CELL_ALL_MLL (16.0) | 213539_at > 9.381863: B-CELL_ALL_T-ALL (45.0) 212148_at > 5.584893: B-CELL_ALL_TCF3-PBX1 (22.0) Number of Leaves : 16 Size of the tree : 31 Time taken to build model: 6.13 seconds Time taken to test model on training data: 1.37 seconds === Error on training data === Correctly Classified Instances 276 98.2206 % Incorrectly Classified Instances 5 1.7794 % Kappa statistic 0.9783 Mean absolute error 0.0073 Root mean squared error 0.0603 Relative absolute error 3.0975 % Root relative squared error 17.6089 % Total Number of Instances 281 === Detailed Accuracy By Class === TP Rate FP Rate Precision Recall F-Measure MCC ROC Area PRC Area Class 0,986 0,005 0,986 0,986 0,986 0,982 1,000 0,999 B-CELL_ALL 1,000 0,000 1,000 1,000 1,000 1,000 1,000 1,000 B-CELL_ALL_TCF3-PBX1 0,980 0,004 0,980 0,980 0,980 0,976 0,998 0,981 B-CELL_ALL_HYPERDIP 0,889 0,008 0,889 0,889 0,889 0,881 0,992 0,902 B-CELL_ALL_HYPO 1,000 0,004 0,944 1,000 0,971 0,970 1,000 0,997 B-CELL_ALL_MLL 0,978 0,000 1,000 0,978 0,989 0,987 1,000 1,000 B-CELL_ALL_T-ALL 1,000 0,000 1,000 1,000 1,000 1,000 1,000 1,000 B-CELL_ALL_ETV6-RUNX1 Weighted Avg. 0,982 0,003 0,982 0,982 0,982 0,979 0,999 0,990 === Confusion Matrix === a b c d e f g <-- classified as 73 0 0 1 0 0 0 | a = B-CELL_ALL 0 22 0 0 0 0 0 | b = B-CELL_ALL_TCF3-PBX1 0 0 50 1 0 0 0 | c = B-CELL_ALL_HYPERDIP 1 0 1 16 0 0 0 | d = B-CELL_ALL_HYPO 0 0 0 0 17 0 0 | e = B-CELL_ALL_MLL 0 0 0 0 1 45 0 | f = B-CELL_ALL_T-ALL 0 0 0 0 0 0 53 | g = B-CELL_ALL_ETV6-RUNX1 Time taken to perform cross-validation: 11.3 seconds === Stratified cross-validation === Correctly Classified Instances 206 73.3096 % Incorrectly Classified Instances 75 26.6904 % Kappa statistic 0.6765 Mean absolute error 0.0771 Root mean squared error 0.2694 Relative absolute error 32.817 % Root relative squared error 78.6331 % Total Number of Instances 281 === Detailed Accuracy By Class === TP Rate FP Rate Precision Recall F-Measure MCC ROC Area PRC Area Class 0,581 0,150 0,581 0,581 0,581 0,431 0,726 0,469 B-CELL_ALL 1,000 0,004 0,957 1,000 0,978 0,976 0,998 0,957 B-CELL_ALL_TCF3-PBX1 0,765 0,057 0,750 0,765 0,757 0,703 0,849 0,580 B-CELL_ALL_HYPERDIP 0,167 0,057 0,167 0,167 0,167 0,110 0,594 0,090 B-CELL_ALL_HYPO 0,941 0,030 0,667 0,941 0,780 0,777 0,964 0,796 B-CELL_ALL_MLL 0,935 0,009 0,956 0,935 0,945 0,935 0,962 0,904 B-CELL_ALL_T-ALL 0,755 0,022 0,889 0,755 0,816 0,782 0,866 0,729 B-CELL_ALL_ETV6-RUNX1 Weighted Avg. 0,733 0,061 0,739 0,733 0,734 0,672 0,841 0,643 === Confusion Matrix === a b c d e f g <-- classified as 43 0 10 9 6 2 4 | a = B-CELL_ALL 0 22 0 0 0 0 0 | b = B-CELL_ALL_TCF3-PBX1 7 0 39 4 1 0 0 | c = B-CELL_ALL_HYPERDIP 12 0 2 3 0 0 1 | d = B-CELL_ALL_HYPO 1 0 0 0 16 0 0 | e = B-CELL_ALL_MLL 3 0 0 0 0 43 0 | f = B-CELL_ALL_T-ALL 8 1 1 2 1 0 40 | g = B-CELL_ALL_ETV6-RUNX1