Options: -L 0.3 -M 0.2 -N 500 -V 0 -S 0 -E 20 -H 10 === Classifier model (full training set) === Sigmoid Node 0 Inputs Weights Threshold 0.11154351280302496 Node 2 0.7448544361139195 Node 3 2.098443969889028 Node 4 -0.8145208539357767 Node 5 0.4292615307191943 Node 6 1.1008860556725533 Node 7 0.8718445658978378 Node 8 -1.8833947041920314 Node 9 -0.9561674400003723 Node 10 -1.509980378484179 Node 11 1.2139582508093116 Sigmoid Node 1 Inputs Weights Threshold -0.14013367759482367 Node 2 -0.7555244115984238 Node 3 -2.0816821646456622 Node 4 0.8288674878527964 Node 5 -0.39222911990287584 Node 6 -1.08542709779086 Node 7 -0.872627265952642 Node 8 1.9308448168453722 Node 9 0.9584007841916875 Node 10 1.4767241982162722 Node 11 -1.2172275860749067 Sigmoid Node 2 Inputs Weights Threshold -0.01605544993838279 Attrib 1007_s_at 0.03344151436074183 Attrib 1053_at 0.02023375626092542 Attrib 117_at 0.0074965995867272445 Attrib 121_at -0.01492896479813205 Attrib 1255_g_at 0.04505130959521497 Attrib 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200622_x_at 0.0383366354770561 Attrib 200623_s_at 0.0029712981936498325 Attrib 200624_s_at -0.035861868280361066 Attrib 200625_s_at 0.03740805958037227 Attrib 200626_s_at -0.023652207258888218 Attrib 200627_at -0.047740918654390556 Attrib 200628_s_at 0.040017992994848615 Attrib 200629_at 0.040623858637817485 Attrib 200630_x_at -0.04746383345646558 Attrib 200631_s_at -0.04021619674403101 Attrib 200632_s_at -0.04138475645385355 Attrib 200633_at 0.027786181210173965 Attrib 200634_at 0.02423861469862848 Attrib 200635_s_at 0.0060610485164493706 Attrib 200636_s_at -0.03416601439803037 Attrib 200637_s_at -0.029156412395801513 Attrib 200638_s_at 0.03649450529402162 Attrib 200639_s_at -0.016674006324465387 Attrib 200640_at -0.022630908019212186 Attrib 200641_s_at 0.016471924505087443 Attrib 200642_at 0.012257543364690393 Attrib 200643_at -0.04220988749929402 Attrib 200644_at 0.02946983995116702 Attrib 200645_at 0.00585944576803786 Attrib 200646_s_at 0.004270588477986051 Attrib 200647_x_at 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Attrib 200873_s_at 0.04544078070684911 Attrib 200874_s_at 0.043182888761653625 Attrib 200875_s_at -0.032210737764433756 Attrib 200876_s_at 0.036097844195573096 Attrib 200877_at -0.022194612462312607 Attrib 200878_at -0.04164023852329547 Attrib 200879_s_at -0.01842526361701751 Attrib 200880_at 0.04177436422596043 Attrib 200881_s_at -0.028053328347334417 Attrib 200882_s_at 0.01004364351476687 Attrib 200883_at 0.02883929104827067 Attrib 200884_at 0.046913390964689536 Attrib 200885_at 0.012492587574178687 Attrib 200886_s_at 0.04238248820594748 Attrib 200887_s_at -0.013823423655993509 Attrib 200888_s_at 0.021163455056046675 Attrib 200889_s_at 0.04670784148059479 Attrib 200890_s_at 0.05067190761882391 Attrib 200891_s_at 0.04390526812192502 Attrib 200892_s_at 0.02140691027764752 Attrib 200893_at -0.043553936007396814 Attrib 200894_s_at -0.03579511987408453 Attrib 200895_s_at 0.044781801087197905 Attrib 200896_x_at -0.02838474645071554 Attrib 200897_s_at -0.020372981880703436 Attrib 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Attrib 200099_s_at 0.04130027915901937 Attrib 200593_s_at 0.008559894848770842 Attrib 200594_x_at -0.02098886516442266 Attrib 200595_s_at 0.0027035906172352764 Attrib 200596_s_at 0.022252091742844277 Attrib 200597_at 0.006094623576609165 Attrib 200598_s_at 0.03417014904229421 Attrib 200599_s_at -0.021575441400288112 Attrib 200600_at -0.01864663860568085 Attrib 200601_at -0.0430275296199146 Attrib 200602_at 0.0324066911290447 Attrib 200603_at 0.006871912108035596 Attrib 200604_s_at -0.020521731873972975 Attrib 200605_s_at -0.006667123506073752 Attrib 200606_at -0.0028187873555661617 Attrib 200607_s_at -0.015231886578074748 Attrib 200608_s_at -0.012980021711408036 Attrib 200609_s_at -0.03511632355032632 Attrib 200610_s_at 0.005834782978886147 Attrib 200611_s_at 0.04265834032892843 Attrib 200612_s_at 0.024331693089059036 Attrib 200613_at -0.025793468854055934 Attrib 200614_at -0.02543102005666388 Attrib 200615_s_at 0.03693876739078902 Attrib 200616_s_at -0.02218819228211708 Attrib 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Attrib 200936_at 0.014608752647779527 Attrib 200937_s_at -0.044389345129560616 Attrib 200938_s_at 0.019296825370258123 Attrib 200939_s_at -0.022644233932541696 Attrib 200940_s_at -0.00698110430300104 Attrib 200941_at -0.009146552081788755 Attrib 200942_s_at 0.012615981856319474 Attrib 200943_at -0.029761063226380904 Attrib 200944_s_at 0.0112218584599013 Attrib 200945_s_at -0.011127934448237052 Attrib 200946_x_at 0.0300501465213144 Attrib 200947_s_at -0.021287889210359987 Attrib 200948_at 0.025524520189545655 Attrib 200949_x_at -0.041061134714462204 Attrib 200950_at -0.012701607392651998 Attrib 200951_s_at 0.050022190340802276 Attrib 200952_s_at 0.007676904586472294 Attrib 200953_s_at -0.03209945205485967 Attrib 200954_at 0.004693510579180701 Attrib 200955_at 0.045897970158951716 Attrib 200956_s_at -0.01248947664579545 Attrib 200957_s_at -0.011725113034252313 Attrib 200958_s_at 0.0372886521193546 Attrib 200959_at 0.04156351486672161 Attrib 200960_x_at 0.05072061637559867 Attrib 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Attrib 200944_s_at -0.023591679166632264 Attrib 200945_s_at -0.044115870262838836 Attrib 200946_x_at 0.044818949475014545 Attrib 200947_s_at -0.03659996702976086 Attrib 200948_at -0.03777673972214134 Attrib 200949_x_at -0.02525452037234778 Attrib 200950_at -0.01732928301455246 Attrib 200951_s_at 0.022151803109612685 Attrib 200952_s_at -0.046753605407365124 Attrib 200953_s_at 0.03931458801888681 Attrib 200954_at 0.0038149502990666687 Attrib 200955_at 0.03518339862486791 Attrib 200956_s_at -0.02412531659611042 Attrib 200957_s_at -0.01634054173848256 Attrib 200958_s_at 0.04179453171406194 Attrib 200959_at 0.034775382023389395 Attrib 200960_x_at -0.016151844596400667 Attrib 200961_at 0.022533717536562272 Attrib 200962_at 0.0453418066113377 Attrib 200963_x_at -0.003394950918019493 Attrib 200964_at 0.02630622244864031 Attrib 200965_s_at -0.01699074869065506 Attrib 200966_x_at 0.04716645585106263 Attrib 200967_at 0.047616080900519255 Attrib 200968_s_at -0.012761565288884561 Attrib 200969_at 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Attrib 200840_at -0.016301804091941114 Attrib 200841_s_at 0.03104767778188949 Attrib 200842_s_at 0.016285331072576154 Attrib 200843_s_at 0.05121530504659413 Attrib 200844_s_at 0.0073632499179173225 Attrib 200845_s_at 0.03683170748488137 Attrib 200846_s_at 0.03570099712046931 Attrib 200847_s_at 0.014640992037891864 Attrib 200848_at -0.030330787604434833 Attrib 200849_s_at 0.0049691114587105565 Attrib 200850_s_at -3.765390842207413E-4 Attrib 200851_s_at -0.034053058380759275 Attrib 200852_x_at 0.01831277389540276 Attrib 200853_at 0.026515539052455718 Attrib 200854_at -0.043001708309782956 Attrib 200855_at -0.04309541946627435 Attrib 200856_x_at 0.012251329177269774 Attrib 200857_s_at 0.043242022227592054 Attrib 200858_s_at -0.01018946572182891 Attrib 200859_x_at 0.023549738135507363 Attrib 200860_s_at -0.028135571979158586 Attrib 200861_at -0.014864090768198385 Attrib 200862_at 0.023539391900045135 Attrib 200863_s_at -0.022969667858115918 Attrib 200864_s_at -0.0031712972320435857 Attrib 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Attrib 200875_s_at -0.002928504175262227 Attrib 200876_s_at 0.0012255317065697838 Attrib 200877_at -0.005160834106012742 Attrib 200878_at -0.013736804706527514 Attrib 200879_s_at 0.04523690288907651 Attrib 200880_at -0.018111033750763998 Attrib 200881_s_at 0.04489612483099848 Attrib 200882_s_at -0.04701085521896297 Attrib 200883_at 0.019398147161562414 Attrib 200884_at 0.02528866392156902 Attrib 200885_at -0.029623808337696123 Attrib 200886_s_at 0.04315543765202036 Attrib 200887_s_at -0.022811944134111656 Attrib 200888_s_at 0.02504169153969961 Attrib 200889_s_at -0.0198899102941853 Attrib 200890_s_at -0.013424181595347938 Attrib 200891_s_at -0.02105174080125089 Attrib 200892_s_at -0.0406655786930964 Attrib 200893_at -0.013873502506008776 Attrib 200894_s_at -0.039166737872708655 Attrib 200895_s_at -0.045152001714273866 Attrib 200896_x_at -0.030161852635135617 Attrib 200897_s_at 0.020160589367990832 Attrib 200898_s_at 0.03225088253277753 Attrib 200899_s_at 0.043342030151090644 Attrib 200900_s_at -0.02189198547593151 Attrib 200901_s_at 0.010119362387998496 Attrib 200902_at -0.052333596893507736 Attrib 200903_s_at -0.010990681155974501 Attrib 200904_at 0.01532138530828157 Attrib 200905_x_at -0.03229752644237991 Attrib 200906_s_at -0.005324560761971209 Attrib 200907_s_at -0.031587300145321004 Attrib 200908_s_at -0.03317874590348 Attrib 200909_s_at 0.006587672600649017 Attrib 200910_at -0.01943409405345071 Attrib 200911_s_at -0.01740792948561083 Attrib 200912_s_at 0.044560518108121686 Attrib 200913_at -0.007723460439567332 Attrib 200914_x_at 0.015238480761789417 Attrib 200915_x_at -0.03504912208214167 Attrib 200916_at -0.021513564481200703 Attrib 200917_s_at 0.03401079348869985 Attrib 200918_s_at 0.002992363901411096 Attrib 200919_at -0.014625686433977584 Attrib 200920_s_at 0.009975813519990353 Attrib 200921_s_at -0.04877950072199998 Attrib 200922_at 0.014612227569888678 Attrib 200923_at 0.010242128159808968 Attrib 200924_s_at 0.036596059311227704 Attrib 200925_at 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Attrib 201027_s_at -0.007890677824616754 Attrib 201028_s_at -0.007231560950318472 Attrib 201029_s_at -0.012049768464141469 Attrib 201030_x_at 0.033152787987881904 Attrib 201031_s_at -0.04348433071891286 Attrib 201032_at 0.012930888922572863 Attrib 201033_x_at -0.03380079885492825 Attrib 201034_at 0.0026493874874649226 Attrib 201035_s_at -0.00677708562006803 Attrib 201036_s_at 0.016913624979132645 Attrib 201037_at 0.013528370501230704 Attrib 201038_s_at -0.032562513644916295 Attrib 201039_s_at -0.0017150792644409043 Attrib 201040_at -0.014462173122313089 Attrib 201041_s_at -0.043524418590641524 Attrib 201042_at 0.012300001496919507 Attrib 201043_s_at 0.01267623115696328 Attrib 201044_x_at 0.027788010682235985 Attrib 201045_s_at -0.06458549098909491 Attrib 201046_s_at -0.037724643643638034 Attrib 201047_x_at -0.046145457341134906 Attrib 201048_x_at -0.016866214265093667 Attrib 201049_s_at 0.016826724210543917 Attrib 201050_at 0.041103502162174385 Attrib 201051_at -0.012648906961404085 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Attrib 200890_s_at 0.047640811197997186 Attrib 200891_s_at -0.033100138225866986 Attrib 200892_s_at 0.026958800667067444 Attrib 200893_at 0.007422293991581826 Attrib 200894_s_at 0.030689866489635346 Attrib 200895_s_at -0.005251130061713387 Attrib 200896_x_at -0.05164939981852748 Attrib 200897_s_at -0.012749530269752653 Attrib 200898_s_at 0.022905546384888786 Attrib 200899_s_at -0.03121367113426555 Attrib 200900_s_at -0.04333955671689113 Attrib 200901_s_at -0.030685978948390185 Attrib 200902_at 0.01010544810715255 Attrib 200903_s_at -0.02948217234386615 Attrib 200904_at 0.016557206830994608 Attrib 200905_x_at -0.027267131613778802 Attrib 200906_s_at 0.040811278475956 Attrib 200907_s_at 0.03758743787737807 Attrib 200908_s_at 0.008422651133919644 Attrib 200909_s_at -0.03375014459694849 Attrib 200910_at 0.018794420827013446 Attrib 200911_s_at 0.028147376587280268 Attrib 200912_s_at 0.021438793328229247 Attrib 200913_at 0.03302293594813116 Attrib 200914_x_at -0.0035207844516222603 Attrib 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Attrib AFFX-r2-P1-cre-5_at 0.04546345496115276 Attrib AFFX-ThrX-3_at 0.014696025484156423 Attrib AFFX-ThrX-5_at 0.028606389213660488 Attrib AFFX-ThrX-M_at 0.032485420506269666 Attrib AFFX-TrpnX-3_at 0.032511541295455366 Attrib AFFX-TrpnX-5_at -0.008358025928364815 Attrib AFFX-TrpnX-M_at 0.014157965533131941 Class adenocarcinoma Input Node 0 Class normal Input Node 1 Time taken to build model: 386.24 seconds Time taken to test model on training data: 0.6 seconds === Error on training data === Correctly Classified Instances 20 100 % Incorrectly Classified Instances 0 0 % Kappa statistic 1 Mean absolute error 0.0077 Root mean squared error 0.0106 Relative absolute error 1.5484 % Root relative squared error 2.1197 % Total Number of Instances 20 === Detailed Accuracy By Class === TP Rate FP Rate Precision Recall F-Measure MCC ROC Area PRC Area Class 1,000 0,000 1,000 1,000 1,000 1,000 1,000 1,000 adenocarcinoma 1,000 0,000 1,000 1,000 1,000 1,000 1,000 1,000 normal Weighted Avg. 1,000 0,000 1,000 1,000 1,000 1,000 1,000 1,000 === Confusion Matrix === a b <-- classified as 10 0 | a = adenocarcinoma 0 10 | b = normal Time taken to perform cross-validation: 968.8 seconds === Stratified cross-validation === Correctly Classified Instances 17 85 % Incorrectly Classified Instances 3 15 % Kappa statistic 0.7 Mean absolute error 0.1769 Root mean squared error 0.3796 Relative absolute error 35.1407 % Root relative squared error 75.3124 % Total Number of Instances 20 === Detailed Accuracy By Class === TP Rate FP Rate Precision Recall F-Measure MCC ROC Area PRC Area Class 0,800 0,100 0,889 0,800 0,842 0,704 0,920 0,942 adenocarcinoma 0,900 0,200 0,818 0,900 0,857 0,704 0,920 0,918 normal Weighted Avg. 0,850 0,150 0,854 0,850 0,850 0,704 0,920 0,930 === Confusion Matrix === a b <-- classified as 8 2 | a = adenocarcinoma 1 9 | b = normal