Options: -C 0.25 -M 2 === Classifier model (full training set) === J48 pruned tree ------------------ NM_021198 <= 10.622414 | X82545 <= 15.595292 | | NM_000088 <= 10.27477 | | | NM_000631 <= 5.606756 | | | | BC028416 <= 4.687321 | | | | | NM_014876 <= 4.594602: breast_cancer_idc (4.0) | | | | | NM_014876 > 4.594602 | | | | | | NM_015215 <= 4.930305 | | | | | | | NM_000393 <= 8.275146 | | | | | | | | NM_018484 <= 6.479778: breast_cancer_dcis (32.0/1.0) | | | | | | | | NM_018484 > 6.479778: breast_cancer_mixed (4.0) | | | | | | | NM_000393 > 8.275146: breast_cancer_mixed (5.0) | | | | | | NM_015215 > 4.930305: breast_cancer_idc (3.0) | | | | BC028416 > 4.687321: breast_cancer_mixed (8.0) | | | NM_000631 > 5.606756: breast_cancer_idc (5.0) | | NM_000088 > 10.27477 | | | NM_012175 <= 6.814914: breast_cancer_idc (14.0) | | | NM_012175 > 6.814914 | | | | NM_005142 <= 4.82074 | | | | | ENST00000298622 <= 4.565681: breast_cancer_idc (4.0) | | | | | ENST00000298622 > 4.565681: breast_cancer_mixed (23.0) | | | | NM_005142 > 4.82074: breast_cancer_idc (6.0) | X82545 > 15.595292: normal (3.0/1.0) NM_021198 > 10.622414: normal (4.0) Number of Leaves : 13 Size of the tree : 25 Time taken to build model: 5.13 seconds Time taken to test model on training data: 1.31 seconds === Error on training data === Correctly Classified Instances 113 98.2609 % Incorrectly Classified Instances 2 1.7391 % Kappa statistic 0.975 Mean absolute error 0.0142 Root mean squared error 0.0843 Relative absolute error 4.0916 % Root relative squared error 20.2545 % Total Number of Instances 115 === Detailed Accuracy By Class === TP Rate FP Rate Precision Recall F-Measure MCC ROC Area PRC Area Class 0,952 0,000 1,000 0,952 0,976 0,963 0,994 0,988 breast_cancer_mixed 1,000 0,012 0,969 1,000 0,984 0,978 0,994 0,969 breast_cancer_dcis 1,000 0,000 1,000 1,000 1,000 1,000 1,000 1,000 breast_cancer_idc 1,000 0,009 0,857 1,000 0,923 0,922 0,998 0,952 normal Weighted Avg. 0,983 0,004 0,984 0,983 0,983 0,976 0,996 0,985 === Confusion Matrix === a b c d <-- classified as 40 1 0 1 | a = breast_cancer_mixed 0 31 0 0 | b = breast_cancer_dcis 0 0 36 0 | c = breast_cancer_idc 0 0 0 6 | d = normal Time taken to perform cross-validation: 8.59 seconds === Stratified cross-validation === Correctly Classified Instances 49 42.6087 % Incorrectly Classified Instances 66 57.3913 % Kappa statistic 0.1738 Mean absolute error 0.291 Root mean squared error 0.5325 Relative absolute error 83.5954 % Root relative squared error 127.8942 % Total Number of Instances 115 === Detailed Accuracy By Class === TP Rate FP Rate Precision Recall F-Measure MCC ROC Area PRC Area Class 0,548 0,342 0,479 0,548 0,511 0,200 0,597 0,420 breast_cancer_mixed 0,258 0,119 0,444 0,258 0,327 0,170 0,566 0,319 breast_cancer_dcis 0,417 0,304 0,385 0,417 0,400 0,111 0,568 0,340 breast_cancer_idc 0,500 0,064 0,300 0,500 0,375 0,344 0,709 0,159 normal Weighted Avg. 0,426 0,256 0,431 0,426 0,419 0,171 0,586 0,354 === Confusion Matrix === a b c d <-- classified as 23 6 11 2 | a = breast_cancer_mixed 9 8 11 3 | b = breast_cancer_dcis 16 3 15 2 | c = breast_cancer_idc 0 1 2 3 | d = normal